Xiling Shen Publications

Found 89 results
Type [ Year(Asc)]
Wang, L, TJ Balmat, AL Antonia, FJ Constantine, R Henao, TW Burke, A Ingham, MT McClain, EL Tsalik, ER Ko, GS Ginsburg, MR DeLong, X Shen, CW Woods, ER Hauser, and DC Ko. "An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility." Genome Medicine 13, no. 1 (2021).
Dohlman, AB, Arguijo D Mendoza, S Ding, M Gao, H Dressman, ID Iliev, SM Lipkin, and X Shen. "The cancer microbiome atlas: a pan-cancer comparative analysis to distinguish tissue-resident microbiota from contaminants." Cell Host Microbe 29, no. 2 (2021): 281-298.e5.
Wang, L, E Wang, Prado J Balcazar, Z Wu, K Xiang, Y Wang, Q Huang, M Negrete, K-Y Chen, W Li, Y Fu, A Dohlman, R Mines, L Zhang, Y Kobayashi, T Chen, G Shi, JP Shen, S Kopetz, PR Tata, V Moreno, C Gersbach, G Crawford, D Hsu, E Huang, P Bu, and X Shen. "Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF-PU.1-DPP4 Axis." Advanced Science (Weinheim, Baden Wurttemberg, Germany) (2021).
McClain, MT, FJ Constantine, R Henao, Y Liu, EL Tsalik, TW Burke, JM Steinbrink, E Petzold, BP Nicholson, R Rolfe, BD Kraft, MS Kelly, DR Saban, C Yu, X Shen, EM Ko, GD Sempowski, TN Denny, GS Ginsburg, and CW Woods. "Dysregulated transcriptional responses to SARS-CoV-2 in the periphery." Nature Communications 12, no. 1 (2021).
Huang, Q, A Garrett, S Bose, S Blocker, AC Rios, H Clevers, and X Shen. "The frontier of live tissue imaging across space and time." Cell Stem Cell 28, no. 4 (2021): 603-622.
Sarvestani, SK, S Signs, B Hu, Y Yeu, H Feng, Y Ni, DR Hill, RC Fisher, S Ferrandon, RK DeHaan, J Stiene, M Cruise, TH Hwang, X Shen,, and EH Huang. "Induced organoids derived from patients with ulcerative colitis recapitulate colitic reactivity." Nature Communications 12, no. 1 (2021).
Tung, K-L, K-Y Chen, M Negrete, T Chen, A Safi, AA Aljamal, L Song, GE Crawford, S Ding, DS Hsu, and X Shen. "Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance." Genes and Diseases 8, no. 2 (2021): 203-214.
Dai, Z, X Yang, F Wu, L Wang, K Xiang, P Li, Q Lv, J Tang, A Dohlman, L Dai, X Shen, and L You. "Living fabrication of functional semi-interpenetrating polymeric materials." Nature Communications 12, no. 1 (2021).
Garrett, A, N Rakhilin, N Wang, J McKey, G Cofer, RB Anderson, B Capel, GA Johnson, and X Shen. "Mapping the peripheral nervous system in the whole mouse via compressed sensing tractography." J Neural Eng 18, no. 4 (2021).
Yu, C, S Littleton, NS Giroux, R Mathew, S Ding, J Kalnitsky, Y Yang, E Petzold, HA Chung, GO Rivera, T Rotstein, R Xi, ER Ko, EL Tsalik, GD Sempowski, TN Denny, TW Burke, MT McClain, CW Woods, X Shen, and DR Saban. "Mucosal-associated invariant T cell responses differ by sex in COVID-19." Med (N Y) 2, no. 6 (2021): 755-772.e5.
Bose, S, H Clevers, and X Shen. "Promises and Challenges of Organoid-Guided Precision Medicine." Med (New York, N.Y.) 2, no. 9 (2021): 1011-1026.
Bauer, M, Z Nascakova, A-I Mihai, PF Cheng, MP Levesque, S Lampart, R Hurwitz, L Pfannkuch, J Dobrovolna, M Jacobs, S Bartfeld, A Dohlman, X Shen, AA Gall, NR Salama, A Töpfer, A Weber, TF Meyer, P Janscak, and A Müller. "The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress." Nature Communications 11, no. 1 (2020).
Wang, L, TJ Balmat, AL Antonia, FJ Constantine, R Henao, TW Burke, A Ingham, MT McClain, EL Tsalik, ER Ko, GS Ginsburg, MR DeLong, X Shen, CW Woods, ER Hauser, and DC Ko. "An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility." Medrxiv (2020).
Giroux, NS, S Ding, MT McClain, TW Burke, E Petzold, HA Chung, GR Palomino, E Wang, R Xi, S Bose, T Rotstein, BP Nicholson, T Chen, R Henao, GD Sempowski, TN Denny, ER Ko, GS Ginsburg, BD Kraft, EL Tsalik, CW Woods, and X Shen. "Chromatin remodeling in peripheral blood cells reflects COVID-19 symptom severity." Biorxiv (2020).
Davis, R, K Lafata, X Li, N Souma, D Howell, X Shen, and L Barisoni. "A Deep Learning Approach to Analysis of Kidney Transplant Frozen Sections." In Modern Pathology : an Official Journal of the United States and Canadian Academy of Pathology, Inc, 1573. Vol. 33., 2020.
Altunel, E, RS Roghani, K-Y Chen, SY Kim, S McCall, KE Ware, X Shen, JA Somarelli, and DS Hsu. "Development of a precision medicine pipeline to identify personalized treatments for colorectal cancer." Bmc Cancer 20, no. 1 (2020).
Barth, BB, L Travis, X Shen, WM Grill, and NJ Spencer. "Electrical stimulation can delay fluid propulsion during motor complexes in mouse colon." In Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. Vol. 32., 2020.
Shen, X. "An imprecise path to precision medicine." Nature Medicine 26, no. 1 (2020).
Huang, Q, MA Cohen, FC Alsina, G Devlin, A Garrett, J McKey, P Havlik, N Rakhilin, E Wang, K Xiang, P Mathews, L Wang, C Bock, V Ruthig, Y Wang, M Negrete, CW Wong, PKL Murthy, S Zhang, AR Daniel, DG Kirsch, Y Kang, B Capel, A Asokan, DL Silver, R Jaenisch, and X Shen. "Intravital imaging of mouse embryos." Science 368, no. 6487 (2020): 181-186.
Somarelli, JA, RS Roghani, AS Moghaddam, BC Thomas, G Rupprecht, KE Ware, E Altunel, JB Mantyh, SY Kim, SJ McCall, X Shen, CR Mantyh, and DS Hsu. "A Precision Medicine Drug Discovery Pipeline Identifies Combined CDK2 and 9 Inhibition as a Novel Therapeutic Strategy in Colorectal Cancer." Mol Cancer Ther 19, no. 12 (2020): 2516-2527.
Dangi, A, NR Natesh, I Husain, Z Ji, L Barisoni, J Kwun, X Shen, EB Thorp, and X Luo. "Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection." Jci Insight 5, no. 20 (2020).
Chen, T, S Oh, S Gregory, X Shen, and AM Diehl. "Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration." Jci Insight 5, no. 22 (2020).
Sarvestani, SK, RK DeHaan, PG Miller, S Bose, X Shen, ML Shuler, and EH Huang. "A Tissue Engineering Approach to Metastatic Colon Cancer." Iscience 23, no. 11 (2020).
Mines, R, K-Y Chen, and X Shen. "Agent-Based Modelling to Delineate Spatiotemporal Control Mechanisms of the Stem Cell Niche." Methods in Molecular Biology (Clifton, N.J.) 1975 (2019): 3-35.