Xiling Shen Publications

Found 43 results
Type [ Year(Asc)]
In Press
Barth, Bradley B., and Xiling Shen. "Computational motility models of neurogastroenterology and neuromodulation." Brain Research (In Press).
Bu, P., K.Y. Chen, K. Xiang, C. Johnson, S. Crown, N. Rakhilin, Y. Ai, L. Wang, R. Xi, Astapova I., Y. Han, J. Li, B.B. Barth, M. Lu, Z. Gao, L. Zhang, M. Herman, D. Hsu, G-F. Zhang, and X. Shen. "Aldolase B-Mediated Fructose Metabolism Drives Metabolic Reprogramming of Colon Cancer Liver Metastasis." Cell Metabolism 27 (2018).
Xu, Yitian, L. Wang, M.D. Zimmerman, K-Y. Chen, L. Huang, D-J. Fu, F Kaya, N. Rakhilin, E.V. Nazarova, P. Bu, V. Dartois, D.G. Russell, and X. Shen. "Matrix Metalloproteinase inhibitors enhance the efficacy of frontline drugs against Mycobacterium tuberculosis." PLoS Pathogen (2018).
Chen, Kai-Yuan, Xiling Shen, and Anna Mae Diehll. "Prometheus revisited." J Clin Invest. (2018).
P Murthy, Kadur Lakshminar, T Srinivasan, MS Bochter, R Xi, AK Varanko, K-L Tung, F Semerci, K Xu, M Maletic-Savatic, SE Cole, and X Shen. "Radical and lunatic fringes modulate notch ligands to support mammalian intestinal homeostasis." eLife 7 (2018).
Kulkarni, S, M-A Micci, J Leser, C Shin, S-C Tang, Y-Y Fu, L Liu, Q Li, M Saha, C Li, G Enikolopov, L Becker, N Rakhilin, M Anderson, X Shen, X Dong, MJ Butte, H Song, EM Southard-Smith, RP Kapur, M Bogunovic, and PJ Pasricha. "Adult enteric nervous system in health is maintained by a dynamic balance between neuronal apoptosis and neurogenesis." Proceedings of the National Academy of Sciences of USA 114, no. 18 (2017): E3709-E3718.
Barth, BB, CS Henriquez, WM Grill, and X Shen. "Electrical stimulation of gut motility guided by an in silico model." Journal of Neural Engineering 14, no. 6 (2017).
Wang, Y, D Huang, K-Y Chen, M Cui, W Wang, X Huang, A Awadellah, Q Li, A Friedman, WW Xin, L Di Martino, F Cominelli, A Miron, R Chan, JG Fox, Y Xu, X Shen, MF Kalady, S Markowitz, I Maillard, JB Lowe, W Xin, and L Zhou. "Fucosylation Deficiency in Mice Leads to Colitis and Adenocarcinoma." Gastroenterology 152, no. 1 (2017): 193-205.e10.
Klose, CSN, T Mahlakõiv, JB Moeller, LC Rankin, A-L Flamar, H Kabata, LA Monticelli, S Moriyama, GG Putzel, N Rakhilin, X Shen, E Kostenis, GM König, T Senda, D Carpenter, DL Farber, and D Artis. "The neuropeptide neuromedin U stimulates innate lymphoid cells and type 2 inflammation." Nature 549, no. 7671 (2017): 282-286.
Chen, K-Y, T Srinivasan, K-L Tung, JM Belmonte, L Wang, PKL Murthy, J Choi, N Rakhilin, S King, AK Varanko, M Witherspoon, N Nishimura, JA Glazier, SM Lipkin, P Bu, and X Shen. "A Notch positive feedback in the intestinal stem cell niche is essential for stem cell self-renewal." Molecular systems biology 13, no. 4 (2017).
Wang, L, P Bu, and X Shen. "Asymmetric division: An antitumor player?" Molecular & cellular oncology 3, no. 4 (2016).
Rothschild, DE, T Srinivasan, LA Aponte-Santiago, X Shen, and IC Allen. "The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids." Journal of Visualized Experiments, no. 111 (2016).
Wang, L, P Bu, Y Ai, T Srinivasan, HJ Chen, K Xiang, SM Lipkin, and X Shen. "A long non-coding RNA targets microRNA miR-34a to regulate colon cancer stem cell asymmetric division." eLife 5 (2016).
Bu, P, L Wang, K-Y Chen, T Srinivasan, PKL Murthy, K-L Tung, AK Varanko, HJ Chen, Y Ai, S King, SM Lipkin, and X Shen. "A miR-34a-Numb Feedforward Loop Triggered by Inflammation Regulates Asymmetric Stem Cell Division in Intestine and Colon Cancer." Cell Stem Cell 18, no. 2 (2016): 189-202.
Srinivasan, T, J Walters, P Bu, EB Than, K-L Tung, K-Y Chen, N Panarelli, J Milsom, L Augenlicht, SM Lipkin, and X Shen. "NOTCH Signaling Regulates Asymmetric Cell Fate of Fast- and Slow-Cycling Colon Cancer-Initiating Cells." Cancer Research 76, no. 11 (2016): 3411-3421.
Srinivasan, T, EB Than, P Bu, K-L Tung, K-Y Chen, L Augenlicht, SM Lipkin, and X Shen. "Notch signalling regulates asymmetric division and inter-conversion between lgr5 and bmi1 expressing intestinal stem cells." Scientific Reports 6 (2016).
Cao, Y, N Rakhilin, PH Gordon, X Shen, and EC Kan. "A real-time spike classification method based on dynamic time warping for extracellular enteric neural recording with large waveform variability." Journal of Neuroscience Methods 261 (2016): 97-109.
Chen, HJ, Z Wei, J Sun, A Bhattacharya, DJ Savage, R Serda, Y Mackeyev, SA Curley, P Bu, L Wang, S Chen, L Cohen-Gould, E Huang, X Shen, SM Lipkin, NG Copeland, NA Jenkins, and ML Shuler. "A recellularized human colon model identifies cancer driver genes." Nature Biotechnology 34, no. 8 (2016): 845-851.
Rakhilin, N, B Barth, J Choi, NL Muñoz, S Kulkarni, JS Jones, DM Small, Y-T Cheng, Y Cao, C LaVinka, E Kan, X Dong, M Spencer, P Pasricha, N Nishimura, and X Shen. "Simultaneous optical and electrical in vivo analysis of the enteric nervous system." Nature Communications 7 (2016).
Joe, DJ, J Hwang, C Johnson, H-Y Cha, J-W Lee, X Shen, MG Spencer, S Tiwari, and M Kim. "Surface Functionalized Graphene Biosensor on Sapphire for Cancer Cell Detection." Journal of nanoscience and nanotechnology 16, no. 1 (2016): 144-151.
Li, J, Y Ai, L Wang, P Bu, CC Sharkey, Q Wu, B Wun, S Roy, X Shen, and MR King. "Targeted drug delivery to circulating tumor cells via platelet membrane-functionalized particles." Biomaterials 76 (2016): 52-65.
Chen, HJ, J Sun, Z Huang, H Hou, M Arcilla, N Rakhilin, DJ Joe, J Choi, P Gadamsetty, J Milsom, G Nandakumar, R Longman, XK Zhou, R Edwards, J Chen, KY Chen, P Bu, L Wang, Y Xu, R Munroe, C Abratte, AD Miller, ZH Gümüş, M Shuler, N Nishimura, W Edelmann, X Shen, and SM Lipkin. "Comprehensive models of human primary and metastatic colorectal tumors in immunodeficient and immunocompetent mice by chemokine targeting." Nature Biotechnology 33, no. 6 (2015): 656-660.
Johnson, C, MO Warmoes, X Shen, and JW Locasale. "Epigenetics and cancer metabolism." Cancer Letters 356, no. 2 Pt A (2015): 309-314.
Sun, S, G Shi, H Sha, Y Ji, X Han, X Shu, H Ma, T Inoue, B Gao, H Kim, P Bu, RD Guber, X Shen, A-H Lee, T Iwawaki, AW Paton, JC Paton, D Fang, B Tsai,, H Wu, S Kersten, Q Long, GE Duhamel, KW Simpson, and L Qi. "IRE1α is an endogenous substrate of endoplasmic-reticulum-associated degradation." Nature Cell Biology 17, no. 12 (2015): 1546-1555.
Bu, P, L Wang, K-Y Chen, N Rakhilin, J Sun, A Closa, K-L Tung, S King, Kristine A Varanko, Y Xu, Huan J Chen, AS Zessin, J Shealy, B Cummings, D Hsu, SM Lipkin, V Moreno, ZH Gümüş, and X Shen. "miR-1269 promotes metastasis and forms a positive feedback loop with TGF-β." Nature Communications 6 (2015).