Xiling Shen Publications

Found 36 results
[ Type(Asc)] Year
Journal Article
Shin, Y-J, Sayed, AH, and Shen, X. "Using an adaptive gene network model for self-organizing multicellular behavior." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings (2012): 5449-5453.
Li, J, Ai, Y, Wang, L, Bu, P, Sharkey, CC, Wu, Q, Wun, B, Roy, S, Shen, X, and King, MR. "Targeted drug delivery to circulating tumor cells via platelet membrane-functionalized particles." Biomaterials 76 (2016): 52-65.
Joe, DJ, Hwang, J, Johnson, C, Cha, H-Y, Lee, J-W, Shen, X, Spencer, MG, Tiwari, S, and Kim, M. "Surface Functionalized Graphene Biosensor on Sapphire for Cancer Cell Detection." Journal of nanoscience and nanotechnology 16, no. 1 (2016): 144-151.
Li, J, Bu, P, Chen, K-Y, and Shen, X. "Spatial perturbation with synthetic protein scaffold reveals robustness of asymmetric cell division." Journal of Biomedical Science and Engineering 6, no. 2 (2013): 134-143.
Rakhilin, N, Barth, B, Choi, J, Muñoz, NL, Kulkarni, S, Jones, JS, Small, DM, Cheng, Y-T, Cao, Y, LaVinka, C et al. "Simultaneous optical and electrical in vivo analysis of the enteric nervous system." Nature Communications 7 (2016).
Chen, HJ, Wei, Z, Sun, J, Bhattacharya, A, Savage, DJ, Serda, R, Mackeyev, Y, Curley, SA, Bu, P, Wang, L et al. "A recellularized human colon model identifies cancer driver genes." Nature Biotechnology 34, no. 8 (2016): 845-851.
Cao, Y, Rakhilin, N, Gordon, PH, Shen, X, and Kan, EC. "A real-time spike classification method based on dynamic time warping for extracellular enteric neural recording with large waveform variability." Journal of Neuroscience Methods 261 (2016): 97-109.
Shin, Y-J, Chen, K-Y, Sayed, AH, Hencey, B, and Shen, X. "Post-translational regulation enables robust p53 regulation." BMC Systems Biology 7 (2013).
Srinivasan, T, Than, EB, Bu, P, Tung, K-L, Chen, K-Y, Augenlicht, L, Lipkin, SM, and Shen, X. "Notch signalling regulates asymmetric division and inter-conversion between lgr5 and bmi1 expressing intestinal stem cells." Scientific Reports 6 (2016).
Srinivasan, T, Walters, J, Bu, P, Than, EB, Tung, K-L, Chen, K-Y, Panarelli, N, Milsom, J, Augenlicht, L, Lipkin, SM et al. "NOTCH Signaling Regulates Asymmetric Cell Fate of Fast- and Slow-Cycling Colon Cancer-Initiating Cells." Cancer Research 76, no. 11 (2016): 3411-3421.
Chen, K-Y, Srinivasan, T, Tung, K-L, Belmonte, JM, Wang, L, Murthy, PKL, Choi, J, Rakhilin, N, King, S, Varanko, AK et al. "A Notch positive feedback in the intestinal stem cell niche is essential for stem cell self-renewal." Molecular systems biology 13, no. 4 (2017).
Cao, Y, Rakhilin, N, Shen, X, and Kan, EC. "Nonamperometric CMOS sensing of intestinal action potentials." 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014 (2014): 2064-2066.
Bu, P, Wang, L, Chen, K-Y, Srinivasan, T, Murthy, PKL, Tung, K-L, Varanko, AK, Chen, HJ, Ai, Y, King, S et al. "A miR-34a-Numb Feedforward Loop Triggered by Inflammation Regulates Asymmetric Stem Cell Division in Intestine and Colon Cancer." Cell Stem Cell 18, no. 2 (2016): 189-202.
Bu, P, Wang, L, Chen, K-Y, Rakhilin, N, Sun, J, Closa, A, Tung, K-L, King, S, A Varanko, Kristine, Xu, Y et al. "miR-1269 promotes metastasis and forms a positive feedback loop with TGF-β." Nature Communications 6 (2015).
Bu, P, Chen, K-Y, Chen, JH, Wang, L, Walters, J, Shin, YJ, Goerger, JP, Sun, J, Witherspoon, M, Rakhilin, N et al. "A microRNA miR-34a-regulated bimodal switch targets Notch in colon cancer stem cells." Cell Stem Cell 12, no. 5 (2013): 602-615.
Chen, K-Y, Liu, X, Bu, P, Lin, C-S, Rakhilin, N, Locasale, JW, and Shen, X. "A metabolic signature of colon cancer initiating cells." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings 2014 (2014): 4759-4762.
Wang, L, Bu, P, Ai, Y, Srinivasan, T, Chen, HJ, Xiang, K, Lipkin, SM, and Shen, X. "A long non-coding RNA targets microRNA miR-34a to regulate colon cancer stem cell asymmetric division." eLife 5 (2016).
Densmore, D, Horowitz, M, Krishnaswamy, S, Shen, X, Arkin, A, Winfree, E, and Voigt, C. "Joint DAC/IWBDA special session design and synthesis of biological circuits." Design Automation Conference (2011): 114-115.
Sun, S, Shi, G, Sha, H, Ji, Y, Han, X, Shu, X, Ma, H, Inoue, T, Gao, B, Kim, H et al. "IRE1α is an endogenous substrate of endoplasmic-reticulum-associated degradation." Nature Cell Biology 17, no. 12 (2015): 1546-1555.
Wang, Y, Huang, D, Chen, K-Y, Cui, M, Wang, W, Huang, X, Awadellah, A, Li, Q, Friedman, A, Xin, WW et al. "Fucosylation Deficiency in Mice Leads to Colitis and Adenocarcinoma." Gastroenterology 152, no. 1 (2017): 193-205.e10.
Shin, Y-J, Hencey, B, Lipkin, SM, and Shen, X. "Frequency domain analysis reveals external periodic fluctuations can generate sustained p53 oscillation." PloS one 6, no. 7 (2011).
Rothschild, DE, Srinivasan, T, Aponte-Santiago, LA, Shen, X, and Allen, IC. "The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids." Journal of Visualized Experiments, no. 111 (2016).
Tan, MH, Kozdon, JB, Shen, X, Shapiro, L, and McAdams, HH. "An essential transcription factor, SciP, enhances robustness of Caulobacter cell cycle regulation." Proceedings of the National Academy of Sciences of USA 107, no. 44 (2010): 18985-18990.
Johnson, C, Warmoes, MO, Shen, X, and Locasale, JW. "Epigenetics and cancer metabolism." Cancer Letters 356, no. 2 Pt A (2015): 309-314.
Shin, YJ, Lipkin, SM, Hencey, B, and Shen, X. "Disturbance rejection helps modulate the P53 oscillation." ASME 2011 Dynamic Systems and Control Conference and Bath/ASME Symposium on Fluid Power and Motion Control, DSCC 2011 2 (2011): 557-563.