Xiling Shen Publications

Found 43 results
[ Type(Asc)] Year
Journal Article
Shin, Y-J, AH Sayed, and X Shen. "Using an adaptive gene network model for self-organizing multicellular behavior." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings (2012): 5449-5453.
Li, J, Y Ai, L Wang, P Bu, CC Sharkey, Q Wu, B Wun, S Roy, X Shen, and MR King. "Targeted drug delivery to circulating tumor cells via platelet membrane-functionalized particles." Biomaterials 76 (2016): 52-65.
Joe, DJ, J Hwang, C Johnson, H-Y Cha, J-W Lee, X Shen, MG Spencer, S Tiwari, and M Kim. "Surface Functionalized Graphene Biosensor on Sapphire for Cancer Cell Detection." Journal of nanoscience and nanotechnology 16, no. 1 (2016): 144-151.
Li, J, P Bu, K-Y Chen, and X Shen. "Spatial perturbation with synthetic protein scaffold reveals robustness of asymmetric cell division." Journal of Biomedical Science and Engineering 6, no. 2 (2013): 134-143.
Rakhilin, N, B Barth, J Choi, NL Muñoz, S Kulkarni, JS Jones, DM Small, Y-T Cheng, Y Cao, C LaVinka, E Kan, X Dong, M Spencer, P Pasricha, N Nishimura, and X Shen. "Simultaneous optical and electrical in vivo analysis of the enteric nervous system." Nature Communications 7 (2016).
Chen, HJ, Z Wei, J Sun, A Bhattacharya, DJ Savage, R Serda, Y Mackeyev, SA Curley, P Bu, L Wang, S Chen, L Cohen-Gould, E Huang, X Shen, SM Lipkin, NG Copeland, NA Jenkins, and ML Shuler. "A recellularized human colon model identifies cancer driver genes." Nature Biotechnology 34, no. 8 (2016): 845-851.
Cao, Y, N Rakhilin, PH Gordon, X Shen, and EC Kan. "A real-time spike classification method based on dynamic time warping for extracellular enteric neural recording with large waveform variability." Journal of Neuroscience Methods 261 (2016): 97-109.
P Murthy, Kadur Lakshminar, T Srinivasan, MS Bochter, R Xi, AK Varanko, K-L Tung, F Semerci, K Xu, M Maletic-Savatic, SE Cole, and X Shen. "Radical and lunatic fringes modulate notch ligands to support mammalian intestinal homeostasis." eLife 7 (2018).
Chen, Kai-Yuan, Xiling Shen, and Anna Mae Diehll. "Prometheus revisited." J Clin Invest. (2018).
Shin, Y-J, K-Y Chen, AH Sayed, B Hencey, and X Shen. "Post-translational regulation enables robust p53 regulation." BMC Systems Biology 7 (2013).
Srinivasan, T, EB Than, P Bu, K-L Tung, K-Y Chen, L Augenlicht, SM Lipkin, and X Shen. "Notch signalling regulates asymmetric division and inter-conversion between lgr5 and bmi1 expressing intestinal stem cells." Scientific Reports 6 (2016).
Srinivasan, T, J Walters, P Bu, EB Than, K-L Tung, K-Y Chen, N Panarelli, J Milsom, L Augenlicht, SM Lipkin, and X Shen. "NOTCH Signaling Regulates Asymmetric Cell Fate of Fast- and Slow-Cycling Colon Cancer-Initiating Cells." Cancer Research 76, no. 11 (2016): 3411-3421.
Chen, K-Y, T Srinivasan, K-L Tung, JM Belmonte, L Wang, PKL Murthy, J Choi, N Rakhilin, S King, AK Varanko, M Witherspoon, N Nishimura, JA Glazier, SM Lipkin, P Bu, and X Shen. "A Notch positive feedback in the intestinal stem cell niche is essential for stem cell self-renewal." Molecular systems biology 13, no. 4 (2017).
Cao, Y, N Rakhilin, X Shen, and EC Kan. "Nonamperometric CMOS sensing of intestinal action potentials." 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014 (2014): 2064-2066.
Klose, CSN, T Mahlakõiv, JB Moeller, LC Rankin, A-L Flamar, H Kabata, LA Monticelli, S Moriyama, GG Putzel, N Rakhilin, X Shen, E Kostenis, GM König, T Senda, D Carpenter, DL Farber, and D Artis. "The neuropeptide neuromedin U stimulates innate lymphoid cells and type 2 inflammation." Nature 549, no. 7671 (2017): 282-286.
Bu, P, L Wang, K-Y Chen, T Srinivasan, PKL Murthy, K-L Tung, AK Varanko, HJ Chen, Y Ai, S King, SM Lipkin, and X Shen. "A miR-34a-Numb Feedforward Loop Triggered by Inflammation Regulates Asymmetric Stem Cell Division in Intestine and Colon Cancer." Cell Stem Cell 18, no. 2 (2016): 189-202.
Bu, P, L Wang, K-Y Chen, N Rakhilin, J Sun, A Closa, K-L Tung, S King, Kristine A Varanko, Y Xu, Huan J Chen, AS Zessin, J Shealy, B Cummings, D Hsu, SM Lipkin, V Moreno, ZH Gümüş, and X Shen. "miR-1269 promotes metastasis and forms a positive feedback loop with TGF-β." Nature Communications 6 (2015).
Bu, P, K-Y Chen, JH Chen, L Wang, J Walters, YJ Shin, JP Goerger, J Sun, M Witherspoon, N Rakhilin, J Li, H Yang, J Milsom, S Lee, W Zipfel, MM Jin, ZH Gümüş, SM Lipkin, and X Shen. "A microRNA miR-34a-regulated bimodal switch targets Notch in colon cancer stem cells." Cell Stem Cell 12, no. 5 (2013): 602-615.
Chen, K-Y, X Liu, P Bu, C-S Lin, N Rakhilin, JW Locasale, and X Shen. "A metabolic signature of colon cancer initiating cells." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings 2014 (2014): 4759-4762.
Xu, Yitian, L. Wang, M.D. Zimmerman, K-Y. Chen, L. Huang, D-J. Fu, F Kaya, N. Rakhilin, E.V. Nazarova, P. Bu, V. Dartois, D.G. Russell, and X. Shen. "Matrix Metalloproteinase inhibitors enhance the efficacy of frontline drugs against Mycobacterium tuberculosis." PLoS Pathogen (2018).
Wang, L, P Bu, Y Ai, T Srinivasan, HJ Chen, K Xiang, SM Lipkin, and X Shen. "A long non-coding RNA targets microRNA miR-34a to regulate colon cancer stem cell asymmetric division." eLife 5 (2016).
Densmore, D, M Horowitz, S Krishnaswamy, X Shen, A Arkin, E Winfree, and C Voigt. "Joint DAC/IWBDA special session design and synthesis of biological circuits." Design Automation Conference (2011): 114-115.
Sun, S, G Shi, H Sha, Y Ji, X Han, X Shu, H Ma, T Inoue, B Gao, H Kim, P Bu, RD Guber, X Shen, A-H Lee, T Iwawaki, AW Paton, JC Paton, D Fang, B Tsai,, H Wu, S Kersten, Q Long, GE Duhamel, KW Simpson, and L Qi. "IRE1α is an endogenous substrate of endoplasmic-reticulum-associated degradation." Nature Cell Biology 17, no. 12 (2015): 1546-1555.
Wang, Y, D Huang, K-Y Chen, M Cui, W Wang, X Huang, A Awadellah, Q Li, A Friedman, WW Xin, L Di Martino, F Cominelli, A Miron, R Chan, JG Fox, Y Xu, X Shen, MF Kalady, S Markowitz, I Maillard, JB Lowe, W Xin, and L Zhou. "Fucosylation Deficiency in Mice Leads to Colitis and Adenocarcinoma." Gastroenterology 152, no. 1 (2017): 193-205.e10.
Shin, Y-J, B Hencey, SM Lipkin, and X Shen. "Frequency domain analysis reveals external periodic fluctuations can generate sustained p53 oscillation." PloS one 6, no. 7 (2011).