Xiling Shen Publications

Found 43 results
[ Type(Desc)] Year
Conference Paper
Shen, X, JM Kahn, and MA Horowitz. "Compensation of multimode fiber dispersion using adaptive optics." In IET Conference Publications, 327-328. Vol. 2005., 2005.
Journal Article
Shin, Y-J, AH Sayed, and X Shen. "Adaptive models for gene networks." PloS one 7, no. 2 (2012).
Kulkarni, S, M-A Micci, J Leser, C Shin, S-C Tang, Y-Y Fu, L Liu, Q Li, M Saha, C Li, G Enikolopov, L Becker, N Rakhilin, M Anderson, X Shen, X Dong, MJ Butte, H Song, EM Southard-Smith, RP Kapur, M Bogunovic, and PJ Pasricha. "Adult enteric nervous system in health is maintained by a dynamic balance between neuronal apoptosis and neurogenesis." Proceedings of the National Academy of Sciences of USA 114, no. 18 (2017): E3709-E3718.
Bu, P., K.Y. Chen, K. Xiang, C. Johnson, S. Crown, N. Rakhilin, Y. Ai, L. Wang, R. Xi, Astapova I., Y. Han, J. Li, B.B. Barth, M. Lu, Z. Gao, L. Zhang, M. Herman, D. Hsu, G-F. Zhang, and X. Shen. "Aldolase B-Mediated Fructose Metabolism Drives Metabolic Reprogramming of Colon Cancer Liver Metastasis." Cell Metabolism 27 (2018).
Shen, X, J Collier, D Dill, L Shapiro, M Horowitz, and HH McAdams. "Architecture and inherent robustness of a bacterial cell-cycle control system." Proceedings of the National Academy of Sciences of USA 105, no. 32 (2008): 11340-11345.
Bu, P, K-Y Chen, SM Lipkin, and X Shen. "Asymmetric division: a marker for cancer stem cells in early stage tumors?" Oncotarget 4, no. 7 (2013): 950-951.
Wang, L, P Bu, and X Shen. "Asymmetric division: An antitumor player?" Molecular & cellular oncology 3, no. 4 (2016).
Chen, K-Y, DJ Joe, JB Shealy, BR Land, and X Shen. "A bio-inspired spatial patterning circuit." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings 2014 (2014): 86-89.
Chen, HJ, R Edwards, S Tucci, P Bu, J Milsom, S Lee, W Edelmann, ZH Gümüş, X Shen, and S Lipkin. "Chemokine 25-induced signaling suppresses colon cancer invasion and metastasis." Journal of Clinical Investigation 122, no. 9 (2012): 3184-3196.
Sikandar, S, D Dizon, X Shen, Z Li, J Besterman, and SM Lipkin. "The class I HDAC inhibitor MGCD0103 induces cell cycle arrest and apoptosis in colon cancer initiating cells by upregulating Dickkopf-1 and non-canonical Wnt signaling." Oncotarget 1, no. 7 (2010): 596-605.
Shen, X, JM Kahn, and MA Horowitz. "Compensation for multimode fiber dispersion by adaptive optics." Optics Letters 30, no. 22 (2005): 2985-2987.
Chen, HJ, J Sun, Z Huang, H Hou, M Arcilla, N Rakhilin, DJ Joe, J Choi, P Gadamsetty, J Milsom, G Nandakumar, R Longman, XK Zhou, R Edwards, J Chen, KY Chen, P Bu, L Wang, Y Xu, R Munroe, C Abratte, AD Miller, ZH Gümüş, M Shuler, N Nishimura, W Edelmann, X Shen, and SM Lipkin. "Comprehensive models of human primary and metastatic colorectal tumors in immunodeficient and immunocompetent mice by chemokine targeting." Nature Biotechnology 33, no. 6 (2015): 656-660.
Barth, Bradley B., and Xiling Shen. "Computational motility models of neurogastroenterology and neuromodulation." Brain Research (In Press).
Shin, YJ, SM Lipkin, B Hencey, and X Shen. "Disturbance rejection helps modulate the P53 oscillation." ASME 2011 Dynamic Systems and Control Conference and Bath/ASME Symposium on Fluid Power and Motion Control, DSCC 2011 2 (2011): 557-563.
Barth, BB, CS Henriquez, WM Grill, and X Shen. "Electrical stimulation of gut motility guided by an in silico model." Journal of Neural Engineering 14, no. 6 (2017).
Johnson, C, MO Warmoes, X Shen, and JW Locasale. "Epigenetics and cancer metabolism." Cancer Letters 356, no. 2 Pt A (2015): 309-314.
Tan, MH, JB Kozdon, X Shen, L Shapiro, and HH McAdams. "An essential transcription factor, SciP, enhances robustness of Caulobacter cell cycle regulation." Proceedings of the National Academy of Sciences of USA 107, no. 44 (2010): 18985-18990.
Rothschild, DE, T Srinivasan, LA Aponte-Santiago, X Shen, and IC Allen. "The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids." Journal of Visualized Experiments, no. 111 (2016).
Shin, Y-J, B Hencey, SM Lipkin, and X Shen. "Frequency domain analysis reveals external periodic fluctuations can generate sustained p53 oscillation." PloS one 6, no. 7 (2011).
Wang, Y, D Huang, K-Y Chen, M Cui, W Wang, X Huang, A Awadellah, Q Li, A Friedman, WW Xin, L Di Martino, F Cominelli, A Miron, R Chan, JG Fox, Y Xu, X Shen, MF Kalady, S Markowitz, I Maillard, JB Lowe, W Xin, and L Zhou. "Fucosylation Deficiency in Mice Leads to Colitis and Adenocarcinoma." Gastroenterology 152, no. 1 (2017): 193-205.e10.
Sun, S, G Shi, H Sha, Y Ji, X Han, X Shu, H Ma, T Inoue, B Gao, H Kim, P Bu, RD Guber, X Shen, A-H Lee, T Iwawaki, AW Paton, JC Paton, D Fang, B Tsai,, H Wu, S Kersten, Q Long, GE Duhamel, KW Simpson, and L Qi. "IRE1α is an endogenous substrate of endoplasmic-reticulum-associated degradation." Nature Cell Biology 17, no. 12 (2015): 1546-1555.
Densmore, D, M Horowitz, S Krishnaswamy, X Shen, A Arkin, E Winfree, and C Voigt. "Joint DAC/IWBDA special session design and synthesis of biological circuits." Design Automation Conference (2011): 114-115.
Wang, L, P Bu, Y Ai, T Srinivasan, HJ Chen, K Xiang, SM Lipkin, and X Shen. "A long non-coding RNA targets microRNA miR-34a to regulate colon cancer stem cell asymmetric division." eLife 5 (2016).
Xu, Yitian, L. Wang, M.D. Zimmerman, K-Y. Chen, L. Huang, D-J. Fu, F Kaya, N. Rakhilin, E.V. Nazarova, P. Bu, V. Dartois, D.G. Russell, and X. Shen. "Matrix Metalloproteinase inhibitors enhance the efficacy of frontline drugs against Mycobacterium tuberculosis." PLoS Pathogen (2018).
Chen, K-Y, X Liu, P Bu, C-S Lin, N Rakhilin, JW Locasale, and X Shen. "A metabolic signature of colon cancer initiating cells." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings 2014 (2014): 4759-4762.