Xiling Shen Publications

Found 72 results
Type [ Year(Asc)]
2020
Bauer, M, Z Nascakova, A-I Mihai, PF Cheng, MP Levesque, S Lampart, R Hurwitz, L Pfannkuch, J Dobrovolna, M Jacobs, S Bartfeld, A Dohlman, X Shen, AA Gall, NR Salama, A Töpfer, A Weber, TF Meyer, P Janscak, and A Müller. "The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress." Nature Communications 11, no. 1 (2020).
Davis, R, K Lafata, X Li, N Souma, D Howell, X Shen, and L Barisoni. "A Deep Learning Approach to Analysis of Kidney Transplant Frozen Sections." In Modern Pathology : an Official Journal of the United States and Canadian Academy of Pathology, Inc, 1573. Vol. 33., 2020.
Altunel, E, RS Roghani, K-Y Chen, SY Kim, S McCall, KE Ware, X Shen, JA Somarelli, and DS Hsu. "Development of a precision medicine pipeline to identify personalized treatments for colorectal cancer." Bmc Cancer 20, no. 1 (2020).
Barth, BB, L Travis, X Shen, WM Grill, and NJ Spencer. "Electrical stimulation can delay fluid propulsion during motor complexes in mouse colon." In Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. Vol. 32., 2020.
Shen, X. "An imprecise path to precision medicine." Nature Medicine 26, no. 1 (2020).
Huang, Q, MA Cohen, FC Alsina, G Devlin, A Garrett, J McKey, P Havlik, N Rakhilin, E Wang, K Xiang, P Mathews, L Wang, C Bock, V Ruthig, Y Wang, M Negrete, CW Wong, PKL Murthy, S Zhang, AR Daniel, DG Kirsch, Y Kang, B Capel, A Asokan, DL Silver, R Jaenisch, and X Shen. "Intravital imaging of mouse embryos." Science 368, no. 6487 (2020): 181-186.
Dangi, A, NR Natesh, I Husain, Z Ji, L Barisoni, J Kwun, X Shen, EB Thorp, and X Luo. "Single-cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection." Jci Insight (2020).
2019
Mines, R, K-Y Chen, and X Shen. "Agent-Based Modelling to Delineate Spatiotemporal Control Mechanisms of the Stem Cell Niche." Methods in Molecular Biology (Clifton, N.J.) 1975 (2019): 3-35.
Xu, Y, L Huang, JL Kirschman, DA Vanover, PM Tiwari, PJ Santangelo, X Shen, and DG Russell. "Exploitation of Synthetic mRNA To Drive Immune Effector Cell Recruitment and Functional Reprogramming In Vivo." The Journal of Immunology 202, no. 2 (2019): 608-617.
Tung, KL, KY Chen, M Negrete, T Chen, A Safi, AA Aljamal, L Song, GE Crawford, S Ding, DS Hsu, and X Shen. "Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance." Genes and Diseases (2019).
Rakhilin, N, A Garrett, C-Y Eom, KR Chavez, DM Small, AR Daniel, MM Kaelberer, MA Mejooli, Q Huang, S Ding, DG Kirsch, DV Bohórquez, N Nishimura, BB Barth, and X Shen. "An intravital window to image the colon in real time." Nature Communications 10, no. 1 (2019).
Dohlman, AB, and X Shen. "Mapping the microbial interactome: Statistical and experimental approaches for microbiome network inference." Experimental Biology and Medicine 244, no. 6 (2019): 445-458.
Roper, J, and X Shen. "Novel Three-Dimensional Cultures of Patient-Derived Cancer and Tumor Immune Cells." Gastroenterology 157, no. 1 (2019): 260-261.
Barth, BB, WM Grill, and X Shen. "Physiological responses to sacral nerve stimulation in rodent colon." In Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. Vol. 31., 2019.
Xi, R, Kadur Lakshminar P Murthy, K-L Tung, CD Guy, J Wan, F Li, Z Wang, X Li, A Varanko, N Rakhilin, Y Xin, B Liu, S-B Qian, L Su, Y Han, and X Shen. "SENP3-mediated host defense response contains HBV replication and restores protein synthesis." Plos One 14, no. 1 (2019).
2018
Shen, X. "Abstract 5479: Targeting fructose-induced metabolic reprogramming in liver metastasis." In Molecular and Cellular Biology / Genetics., 2018.
Bu, P, K-Y Chen, K Xiang, C Johnson, SB Crown, N Rakhilin, Y Ai, L Wang, R Xi, I Astapova, Y Han, J Li, BB Barth, M Lu, Z Gao, R Mines, L Zhang, M Herman, D Hsu, G-F Zhang, and X Shen. "Aldolase B-Mediated Fructose Metabolism Drives Metabolic Reprogramming of Colon Cancer Liver Metastasis." Cell Metab 27, no. 6 (2018): 1249-1262.e4.
Barth, BB, and X Shen. "Computational motility models of neurogastroenterology and neuromodulation." Brain Research 1693, no. Pt B (2018): 174-179.
Kaelberer, MM, KL Buchanan, ME Klein, BB Barth, MM Montoya, X Shen, and DV Bohórquez. "A gut-brain neural circuit for nutrient sensory transduction." Science 361, no. 6408 (2018).
Choi, J, N Rakhilin, P Gadamsetty, DJ Joe, T Tabrizian, SM Lipkin, DM Huffman, X Shen, and N Nishimura. "Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging." Scientific Reports 8, no. 1 (2018).
Xu, Y, L Wang, MD Zimmerman, K-Y Chen, L Huang, D-J Fu, F Kaya, N Rakhilin, EV Nazarova, P Bu, V Dartois, DG Russell, and X Shen. "Matrix metalloproteinase inhibitors enhance the efficacy of frontline drugs against Mycobacterium tuberculosis." Plos Pathogens 14, no. 4 (2018).
Gao, Z, K-Y Chen, O Mueller, H Zhang, N Rakhilin, J Chen, and X Shen. "Microbiota of Inflammatory Bowel Disease Models." In Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference, 2374-2377. Vol. 2018., 2018.
Shen, X. "MICRORNA SAFEGUARDING THE INFLAMMATORY COLON STEM CELL NICHE." In Inflammatory Bowel Diseases, S27. Vol. 24., 2018.
Wang, L, E Wang, Y Wang, R Mines, K Xiang, Z Sun, G Zhou, K-Y Chen, N Rakhilin, S Chao, G Ye, Z Wu, H Yan, H Shen, J Everitt, P Bu, and X Shen. "miR-34a is a microRNA safeguard for Citrobacter-induced inflammatory colon oncogenesis." Elife 7 (2018).
Xu, Y, L Huang, JL Kirschman, D Vanover, PM Tiwari, PJ Santangelo, X Shen, and DG Russell. "A novel methodology to modulate immune environment using synthetic mRNA." In The Journal of Immunology. Vol. 200., 2018.

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