Xiling Shen Publications

Found 61 results
Type [ Year(Asc)]
2019
Mines, R, K-Y Chen, and X Shen. "Agent-Based Modelling to Delineate Spatiotemporal Control Mechanisms of the Stem Cell Niche." Methods in Molecular Biology (Clifton, N.J.) 1975 (2019): 3-35.
Chen, HJ, Z Wei, J Sun, A Bhattacharya, DJ Savage, R Serda, Y Mackeyev, SA Curley, P Bu, L Wang, S Chen, L Cohen-Gould, E Huang, X Shen, SM Lipkin, NG Copeland, NA Jenkins, and ML Shuler. "Author Correction: A recellularized human colon model identifies cancer driver genes." Nature Biotechnology 37, no. 7 (2019).
Choi, J, N Rakhilin, P Gadamsetty, DJ Joe, T Tabrizian, SM Lipkin, DM Huffman, X Shen, and N Nishimura. "Author Correction: Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging." Scientific Reports 9, no. 1 (2019).
Xu, Y, L Huang, JL Kirschman, DA Vanover, PM Tiwari, PJ Santangelo, X Shen, and DG Russell. "Exploitation of Synthetic mRNA To Drive Immune Effector Cell Recruitment and Functional Reprogramming In Vivo." The Journal of Immunology 202, no. 2 (2019): 608-617.
Dohlman, AB, and X Shen. "Mapping the microbial interactome: Statistical and experimental approaches for microbiome network inference." Experimental Biology and Medicine 244, no. 6 (2019): 445-458.
Roper, J, and X Shen. "Novel Three-Dimensional Cultures of Patient-Derived Cancer and Tumor Immune Cells." Gastroenterology 157, no. 1 (2019): 260-261.
Xi, R, Kadur Lakshminar P Murthy, K-L Tung, CD Guy, J Wan, F Li, Z Wang, X Li, A Varanko, N Rakhilin, Y Xin, B Liu, S-B Qian, L Su, Y Han, and X Shen. "SENP3-mediated host defense response contains HBV replication and restores protein synthesis." Plos One 14, no. 1 (2019).
2018
Bu, P, K-Y Chen, K Xiang, C Johnson, SB Crown, N Rakhilin, Y Ai, L Wang, R Xi, I Astapova, Y Han, J Li, BB Barth, M Lu, Z Gao, R Mines, L Zhang, M Herman, D Hsu, G-F Zhang, and X Shen. "Aldolase B-Mediated Fructose Metabolism Drives Metabolic Reprogramming of Colon Cancer Liver Metastasis." Cell Metab 27, no. 6 (2018): 1249-1262.e4.
Barth, BB, and X Shen. "Computational motility models of neurogastroenterology and neuromodulation." Brain Research 1693, no. Pt B (2018): 174-179.
Kaelberer, MM, KL Buchanan, ME Klein, BB Barth, MM Montoya, X Shen, and DV Bohórquez. "A gut-brain neural circuit for nutrient sensory transduction." Science 361, no. 6408 (2018).
Choi, J, N Rakhilin, P Gadamsetty, DJ Joe, T Tabrizian, SM Lipkin, DM Huffman, X Shen, and N Nishimura. "Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging." Scientific Reports 8, no. 1 (2018).
Xu, Y, L Wang, MD Zimmerman, K-Y Chen, L Huang, D-J Fu, F Kaya, N Rakhilin, EV Nazarova, P Bu, V Dartois, DG Russell, and X Shen. "Matrix metalloproteinase inhibitors enhance the efficacy of frontline drugs against Mycobacterium tuberculosis." Plos Pathogens 14, no. 4 (2018).
Gao, Z, K-Y Chen, O Mueller, H Zhang, N Rakhilin, J Chen, and X Shen. "Microbiota of Inflammatory Bowel Disease Models." In Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference, 2374-2377. Vol. 2018., 2018.
Wang, L, E Wang, Y Wang, R Mines, K Xiang, Z Sun, G Zhou, K-Y Chen, N Rakhilin, S Chao, G Ye, Z Wu, H Yan, H Shen, J Everitt, P Bu, and X Shen. "miR-34a is a microRNA safeguard for Citrobacter-induced inflammatory colon oncogenesis." Elife 7 (2018).
Xu, Y, L Huang, JL Kirschman, D Vanover, PM Tiwari, PJ Santangelo, X Shen, and DG Russell. "A novel methodology to modulate immune environment using synthetic mRNA." In The Journal of Immunology. Vol. 200., 2018.
Barth, BB, H-I Huang, GE Hammer, and X Shen. "Opportunities and Challenges for Single-Unit Recordings from Enteric Neurons in Awake Animals." Micromachines 9, no. 9 (2018).
Chen, K-Y, X Shen, and AM Diehl. "Prometheus revisited." J Clin Invest 128, no. 6 (2018): 2192-2193.
P Murthy, Kadur Lakshminar, T Srinivasan, MS Bochter, R Xi, AK Varanko, K-L Tung, F Semerci, K Xu, M Maletic-Savatic, SE Cole, and X Shen. "Radical and lunatic fringes modulate notch ligands to support mammalian intestinal homeostasis." Elife 7 (2018).
Zavrel, EA, ML Shuler, and X Shen. "A SIMPLE ASPECT RATIO DEPENDENT METHOD OF PATTERNING MICROWELLS FOR SELECTIVE CELL ATTACHMENT." In 2018 Design of Medical Devices Conference : April 9 12, 2018, Minneapolis, Minnesota, Usa. Design of Medical Devices Conference (2018 : Minneapolis, Minn.). Vol. 2018., 2018.
Chen, K-Y, T Srinivasan, C Lin, K-L Tung, Z Gao, DS Hsu, SM Lipkin, and X Shen. "Single-Cell Transcriptomics Reveals Heterogeneity and Drug Response of Human Colorectal Cancer Organoids." Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference 2018 (2018): 2378-2381.
Mines, RC, A Dohlman, S-X Lim, K-L Tung, E Wang, and X Shen. "Spatial Patterning from an Integrated Wnt/β-catenin and Notch/Delta Gene Circuit." Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference 2018 (2018): 5022-5025.
Zavrel, EA, and X Shen. "TOWARD A MICROFLUIDIC IMPLEMENTATION OF A DIGITAL POTENTIOMETER." In 2018 Design of Medical Devices Conference : April 9 12, 2018, Minneapolis, Minnesota, Usa. Design of Medical Devices Conference (2018 : Minneapolis, Minn.). Vol. 2018., 2018.
2017
Kulkarni, S, M-A Micci, J Leser, C Shin, S-C Tang, Y-Y Fu, L Liu, Q Li, M Saha, C Li, G Enikolopov, L Becker, N Rakhilin, M Anderson, X Shen, X Dong, MJ Butte, H Song, EM Southard-Smith, RP Kapur, M Bogunovic, and PJ Pasricha. "Adult enteric nervous system in health is maintained by a dynamic balance between neuronal apoptosis and neurogenesis." Proceedings of the National Academy of Sciences of the United States of America 114, no. 18 (2017): E3709-E3718.
Barth, BB, CS Henriquez, WM Grill, and X Shen. "Electrical stimulation of gut motility guided by an in silico model." Journal of Neural Engineering 14, no. 6 (2017).
Wang, Y, D Huang, K-Y Chen, M Cui, W Wang, X Huang, A Awadellah, Q Li, A Friedman, WW Xin, L Di Martino, F Cominelli, A Miron, R Chan, JG Fox, Y Xu, X Shen, MF Kalady, S Markowitz, I Maillard, JB Lowe, W Xin, and L Zhou. "Fucosylation Deficiency in Mice Leads to Colitis and Adenocarcinoma." Gastroenterology 152, no. 1 (2017): 193-205.e10.

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