Xiling Shen Publications

Found 80 results
Type [ Year(Asc)]
In Press
Dohlman, AB, D Arguijo-Mendoza, S Ding, M Gao, H Dressman, ID Iliev, SM Lipkin, and X Shen. "The Cancer Microbiome Atlas: A Pan-Cancer Comparative Analysis to Distinguish Tissue-Resident Microbiota from Equiprevalent Contaminants." Cell Host & Microbe (In Press).
Sarvestani, SK, S Signs, B Hu, Y Yeu, H Feng, Y Ni, DR Hill, RC Fisher, S Ferrandon, RK DeHaan, J Stiene, M Cruise, TH Hwang, X Shen,, and EH Huang. "Induced organoids derived from patients with ulcerative colitis recapitulate colitic reactivity." Nature Communications 12, no. 1 (2021).
Bauer, M, Z Nascakova, A-I Mihai, PF Cheng, MP Levesque, S Lampart, R Hurwitz, L Pfannkuch, J Dobrovolna, M Jacobs, S Bartfeld, A Dohlman, X Shen, AA Gall, NR Salama, A Töpfer, A Weber, TF Meyer, P Janscak, and A Müller. "The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress." Nature Communications 11, no. 1 (2020).
Dohlman, AB, Arguijo D Mendoza, S Ding, M Gao, H Dressman, ID Iliev, SM Lipkin, and X Shen. "The cancer microbiome atlas: a pan-cancer comparative analysis to distinguish tissue-resident microbiota from contaminants." Cell Host & Microbe (2020).
Giroux, NS, S Ding, MT McClain, TW Burke, E Petzold, HA Chung, GR Palomino, E Wang, R Xi, S Bose, T Rotstein, BP Nicholson, T Chen, R Henao, GD Sempowski, TN Denny, ER Ko, GS Ginsburg, BD Kraft, EL Tsalik, CW Woods, and X Shen. "Chromatin remodeling in peripheral blood cells reflects COVID-19 symptom severity." Biorxiv (2020).
Davis, R, K Lafata, X Li, N Souma, D Howell, X Shen, and L Barisoni. "A Deep Learning Approach to Analysis of Kidney Transplant Frozen Sections." In Modern Pathology : an Official Journal of the United States and Canadian Academy of Pathology, Inc, 1573. Vol. 33., 2020.
Altunel, E, RS Roghani, K-Y Chen, SY Kim, S McCall, KE Ware, X Shen, JA Somarelli, and DS Hsu. "Development of a precision medicine pipeline to identify personalized treatments for colorectal cancer." Bmc Cancer 20, no. 1 (2020).
Barth, BB, L Travis, X Shen, WM Grill, and NJ Spencer. "Electrical stimulation can delay fluid propulsion during motor complexes in mouse colon." In Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. Vol. 32., 2020.
Shen, X. "An imprecise path to precision medicine." Nature Medicine 26, no. 1 (2020).
Huang, Q, MA Cohen, FC Alsina, G Devlin, A Garrett, J McKey, P Havlik, N Rakhilin, E Wang, K Xiang, P Mathews, L Wang, C Bock, V Ruthig, Y Wang, M Negrete, CW Wong, PKL Murthy, S Zhang, AR Daniel, DG Kirsch, Y Kang, B Capel, A Asokan, DL Silver, R Jaenisch, and X Shen. "Intravital imaging of mouse embryos." Science 368, no. 6487 (2020): 181-186.
Somarelli, JA, RS Roghani, AS Moghaddam, BC Thomas, G Rupprecht, KE Ware, E Altunel, JB Mantyh, SY Kim, SJ McCall, X Shen, CR Mantyh, and DS Hsu. "A Precision Medicine Drug Discovery Pipeline Identifies Combined CDK2 and 9 Inhibition as a Novel Therapeutic Strategy in Colorectal Cancer." Mol Cancer Ther 19, no. 12 (2020): 2516-2527.
Dangi, A, NR Natesh, I Husain, Z Ji, L Barisoni, J Kwun, X Shen, EB Thorp, and X Luo. "Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection." Jci Insight 5, no. 20 (2020).
Chen, T, S Oh, S Gregory, X Shen, and AM Diehl. "Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration." Jci Insight 5, no. 22 (2020).
Sarvestani, SK, RK DeHaan, PG Miller, S Bose, X Shen, ML Shuler, and EH Huang. "A Tissue Engineering Approach to Metastatic Colon Cancer." Iscience 23, no. 11 (2020).
Mines, R, K-Y Chen, and X Shen. "Agent-Based Modelling to Delineate Spatiotemporal Control Mechanisms of the Stem Cell Niche." Methods in Molecular Biology (Clifton, N.J.) 1975 (2019): 3-35.
Xu, Y, L Huang, JL Kirschman, DA Vanover, PM Tiwari, PJ Santangelo, X Shen, and DG Russell. "Exploitation of Synthetic mRNA To Drive Immune Effector Cell Recruitment and Functional Reprogramming In Vivo." The Journal of Immunology 202, no. 2 (2019): 608-617.
Tung, KL, KY Chen, M Negrete, T Chen, A Safi, AA Aljamal, L Song, GE Crawford, S Ding, DS Hsu, and X Shen. "Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance." Genes and Diseases (2019).
Rakhilin, N, A Garrett, C-Y Eom, KR Chavez, DM Small, AR Daniel, MM Kaelberer, MA Mejooli, Q Huang, S Ding, DG Kirsch, DV Bohórquez, N Nishimura, BB Barth, and X Shen. "An intravital window to image the colon in real time." Nature Communications 10, no. 1 (2019).
Dohlman, AB, and X Shen. "Mapping the microbial interactome: Statistical and experimental approaches for microbiome network inference." Experimental Biology and Medicine 244, no. 6 (2019): 445-458.
Roper, J, and X Shen. "Novel Three-Dimensional Cultures of Patient-Derived Cancer and Tumor Immune Cells." Gastroenterology 157, no. 1 (2019): 260-261.
Barth, BB, WM Grill, and X Shen. "Physiological responses to sacral nerve stimulation in rodent colon." In Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. Vol. 31., 2019.
Xi, R, Kadur Lakshminar P Murthy, K-L Tung, CD Guy, J Wan, F Li, Z Wang, X Li, A Varanko, N Rakhilin, Y Xin, B Liu, S-B Qian, L Su, Y Han, and X Shen. "SENP3-mediated host defense response contains HBV replication and restores protein synthesis." Plos One 14, no. 1 (2019).
Shen, X. "Abstract 5479: Targeting fructose-induced metabolic reprogramming in liver metastasis." In Molecular and Cellular Biology / Genetics., 2018.
Bu, P, K-Y Chen, K Xiang, C Johnson, SB Crown, N Rakhilin, Y Ai, L Wang, R Xi, I Astapova, Y Han, J Li, BB Barth, M Lu, Z Gao, R Mines, L Zhang, M Herman, D Hsu, G-F Zhang, and X Shen. "Aldolase B-Mediated Fructose Metabolism Drives Metabolic Reprogramming of Colon Cancer Liver Metastasis." Cell Metab 27, no. 6 (2018): 1249-1262.e4.
Barth, BB, and X Shen. "Computational motility models of neurogastroenterology and neuromodulation." Brain Research 1693, no. Pt B (2018): 174-179.